Dead hairpin entry

Stem-loop gma-MIR1528

Accession

MI0007246

Description

Glycine max gma-MIR1528 precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

1 open access papers mention gma-MIR1528
(1 sentences)

Sequence

3059 reads, 61.0 reads per million, 162 experiments

ugauuguugaAUAGAUUAGAUCAAUAUAUUAGUaaguuuuuauuagaccaagaugagagucaguuuuuauuggauuaaucugucauaucucaaauuuuauuucauuuaagaacaaaauauaauguuauguuuguaacuauuaaaaaaucaaggagaagaugaaaauuaaauuauauuuuaucuuuaaauaaaauaaaauuuuggguauaaCAAAUUAGUCCAAUAGAAACuuauugauauuuugaucuaaucuauucaccaacca
((.(((.(((((((((((((((((.(((((((((.(((((((((.......)))))))).)((((((((((((((((((.(((.((((((.(((((((((((.(((((((...(((((((((((((((....))))).........(((........))).........))))))))))...))))))).))))))))))).)))))).))).))))))))))))))))))))))))))).))))))))))))))))).))).))

Structure

  a   u                 U         aguuuuuauuagaccaagaugagaguc                  c   c      c           c       aac          guuauguuuguaacuauuaaaa 
ug uug ugaAUAGAUUAGAUCAA AUAUUAGUa                           aguuuuuauuggauuaau ugu auaucu aaauuuuauuu auuuaag   aaaauauaau                      a
|| ||| ||||||||||||||||| |||||||||                           |||||||||||||||||| ||| |||||| ||||||||||| |||||||   ||||||||||                       
ac aac acuuaucuaaucuaguu uauaguuau                           uCAAAGAUAACCUGAUUA ACa uauggg uuuaaaauaaa uaaauuu   uuuuauauua                      a
  c   c                 u         ---------------------------                  A   a      u           a       cua          aauuaaaaguagaagaggaacu