Stem-loop gma-MIR1529

Accession

MI0007248

Description

Glycine max gma-MIR1529 precursor miRNA

Sequence

aauuagauguuaaucauuaauugucuaccuucacuauuuuauuaaacguuuaucguuacaugucacgauuuuauuaaacauuaauuuuauguaccuaauuaacguuaacuuccaauaaaauuaggaugcgugauaaucaacauuuaauaaaaguacgacacuuaacgaUUAAAGGAAACAAUUAAUCGUUAacguucaauu
((((.(((((((((.(((((((((.(.((((....................(((((((..((((....((((((((((..((.(((((((((((((((((..................))))))).))))))).))).))..))))))))))....))))..)))))))..))))).))))))))).))))))))).))))

Structure

    a         c         c a    cacuauuuuauuaaacguuu       ca    acga          ca  a   -       -       aacguuaa 
aauu gauguuaau auuaauugu u ccuu                    aucguua  uguc    uuuuauuaaa  uu auu uuaugua ccuaauu        c
|||| ||||||||| ||||||||| | ||||                    |||||||  ||||    ||||||||||  || ||| ||||||| |||||||         
uuaa uugcaAUUG UAAUUAACA A GGAA                    Uagcaau  acag    aaaauaauuu  aa uaa agugcgu ggauuaa        u
    c         C         A -    ------------------AU       uc    caug          ac  c   u       a       aauaaccu 

Annotation confidence Not enough data

Genome context

chr1: 54737797-54737997 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR1529

Mature gma-miR1529

• Accession: MIMAT0007391
• Description: Glycine max gma-miR1529 mature miRNA
• Sequence: 169 - UUAAAGGAAACAAUUAAUCGUUA - 191
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160