Stem-loop gma-MIR1530

Accession

MI0007249

Description

Glycine max gma-MIR1530 precursor miRNA

Literature search

2 open access papers mention gma-MIR1530
(9 sentences)

Sequence

1059 reads, 69.0 reads per million, 123 experiments

gcaaaauauaauauuaauauaaguuuuaugugaaaAUAAUUUAAUUUUUUUUaauuuauuauauuuuuauaauuuuauauauuaucuuuuaaaauauaauauauaagaUUAAAUUCUAUUUUCAcauaaauuaaaauauguauguuuau
.........(((((..((((....((((((((((((((((((((((((.....((.(((((((((((.......................))))))))))).))))))))))))..)))))))))))))).....))))..)))))...

Structure

gcaaaauau     ua    -aagu              --          UUUUa  u           uauaauuuua 
         aauau  auau     uuuaugugaaaAUA  AUUUAAUUUU     au uauuauauuuu          u
         |||||  ||||     ||||||||||||||  ||||||||||     || |||||||||||          a
         uugua  uaua     aaauacACUUUUAU  UAAAUUagaa     ua auaauauaaaa          u
------uau     ug    aaauu              CU          -----  u           uuuucuauua 

Annotation confidence Low

Genome context

chr10: 41788173-41788321 [+]

Mature gma-miR1530-5p

• Accession: MIMAT0054044
• Description: Glycine max gma-miR1530-5p mature miRNA
• Sequence: 36 - AUAAUUUAAUUUUUUUU - 52
• Evidence: experimental ; unknown

Mature gma-miR1530-3p

• Accession: MIMAT0007392
• Description: Glycine max gma-miR1530-3p mature miRNA
• Sequence: 109 - UUAAAUUCUAUUUUCA - 124
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160