Stem-loop gma-MIR1531

Accession

MI0007250

Description

Glycine max gma-MIR1531 precursor miRNA

Sequence

11967 reads, 35.0 reads per million, 170 experiments

aagucuucccAUAUGGACGAAGAGAUAGGUAAauguugaaguaggccuguggguuucuuggcuucaaccuuuaCCAAUCCCUUCGUCCAUAUGGgaagacuugucucucgacuuc
((((((((((((((((((((((.(((.((((((.(((((((((((((....)))))....)))))))).)))))).))).))))))))))))))))))))))(((....)))...

Structure

-------------                      A   A      u        ----     u 
             aagucuucccAUAUGGACGAAG GAU GGUAAa guugaagu    aggcc g
             |||||||||||||||||||||| ||| |||||| ||||||||    |||||  
             uucagaagGGUAUACCUGCUUC CUA CCauuu caacuucg    uuugg u
cuucagcucucug                      C   A      c        guuc     g 

Annotation confidence High

Genome context

chr20: 41470544-41470658 [+]

Mature gma-miR1531-5p

• Accession: MIMAT0032033
• Description: Glycine max gma-miR1531-5p mature miRNA
• Sequence: 11 - AUAUGGACGAAGAGAUAGGUAA - 32
• Evidence: experimental ; Illumina [2]

Mature gma-miR1531-3p

• Accession: MIMAT0007393
• Description: Glycine max gma-miR1531-3p mature miRNA
• Sequence: 74 - CCAAUCCCUUCGUCCAUAUGG - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153