Stem-loop gma-MIR1520c

Accession

MI0007252

Description

Glycine max gma-MIR1520c precursor miRNA

Literature search

3 open access papers mention gma-MIR1520c
(3 sentences)

Sequence

48151 reads, 152.0 reads per million, 178 experiments

augaugacugucacgugucauauucugauugaucaauaaaaauaauaauacauuuuauuuuuuauGGAGUUGACAUCCAAUCAGAACAUgacacaugacaaacaucauucAAUAAGAACGUGACACGUGACAGUuaacau
(((.(((((((((((((((((.((((.(((((.....((((((((.........))))))))..((((.......)))).(((.....)))...((((......))))))))).)))).))))))))))))))))).)))

Structure

   a                 a    g     ucaauaaaaauaauaauacauuuuauuuuuua    GU 
aug ugacugucacgugucau uucu auuga                                uGGA  U
||| ||||||||||||||||| |||| |||||                                ||||  G
uac auUGACAGUGCACAGUG AAGA UAAcu                                ACCU  A
   a                 C    A     ---uacuacaaacaguacacagUACAAGACUA    AC 

Annotation confidence Not enough data

Genome context

chr17: 37603731-37603870 [+]

Mature gma-miR1520c-5p

• Accession: MIMAT0054046
• Description: Glycine max gma-miR1520c-5p mature miRNA
• Sequence: 66 - GGAGUUGACAUCCAAUCAGAACAU - 89
• Evidence: experimental ; unknown

Mature gma-miR1520c-3p

• Accession: MIMAT0007395
• Description: Glycine max gma-miR1520c-3p mature miRNA
• Sequence: 111 - AAUAAGAACGUGACACGUGACAGU - 134
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160