Stem-loop gma-MIR1533

Accession

MI0007253

Description

Glycine max gma-MIR1533 precursor miRNA

Literature search

1 open access papers mention gma-MIR1533
(1 sentences)

Sequence

uguaaauuauucauauguuauuauuauuauugucacuaucaucaucaccuuuauuacuaucaccaucaccaucauugucucuaucaaugauaguggccaugaucaauaaugAUAAUAAAAAUAAUAAUGAuacuaauggu
.....((((((..((((((((((((.(((((((((...............(((((...((((...((((.(((((((.......))))))).))))...)))).)))))))))))))).))))))))).)))..))))))

Structure

uguaa      ca   -         a         cuaucaucaucaccu     acu    cca    c       uc 
     auuauu  uau guuauuauu uuauuguca               uuauu   auca   ucac aucauug  u
     ||||||  ||| ||||||||| |||||||||               |||||   ||||   |||| |||||||  c
     ugguaa  auA UAAUAAUAA AAUAAUAgu               aauaa   uagu   ggug uaguaac  u
-----      uc   G         A         ---------------     --c    acc    a       ua 

Annotation confidence Not enough data

Genome context

chr20: 47549866-47550005 [-]

Mature gma-miR1533

• Accession: MIMAT0007396
• Description: Glycine max gma-miR1533 mature miRNA
• Sequence: 112 - AUAAUAAAAAUAAUAAUGA - 130
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160