Stem-loop gma-MIR1535a

Accession

MI0007257

Description

Glycine max gma-MIR1535a precursor miRNA

Literature search

1 open access papers mention gma-MIR1535a
(1 sentences)

Sequence

113266 reads, 598.0 reads per million, 177 experiments

uaagaggcCUAGACAUCACCACAAACAAGucaccaaagaaggaagagugucacagaauccgggugauCUUGUUUGUGGUGAUGUCUAGaccuuccu
...((((.((((((((((((((((((((((((((......(((....((...))...))).))))).))))))))))))))))))))).))))...

Structure

uaa    c                     -     aaagaa   agag  u 
   gagg CUAGACAUCACCACAAACAAG ucacc      gga    ug  
   |||| ||||||||||||||||||||| |||||      |||    || c
   uucc GAUCUGUAGUGGUGUUUGUUC agugg      ccu    ac  
ucc    a                     u     -----g   -aag  a 

Annotation confidence High

Genome context

chr19: 43989978-43990073 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR1535a

Mature gma-miR1535a-5p

• Accession: MIMAT0054048
• Description: Glycine max gma-miR1535a-5p mature miRNA
• Sequence: 9 - CUAGACAUCACCACAAACAAG - 29
• Evidence: experimental ; unknown

Mature gma-miR1535a-3p

• Accession: MIMAT0007398
• Description: Glycine max gma-miR1535a-3p mature miRNA
• Sequence: 68 - CUUGUUUGUGGUGAUGUCUAG - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160