Stem-loop mdo-mir-1542-1

Accession

MI0007265

Description

Monodelphis domestica mdo-mir-1542-1 precursor miRNA

Sequence

122574 reads, 2600.0 reads per million, 5 experiments

ccggugcCUGGCACAUAGGAGUUUCAUAAauguauuuucauuaauuUAUUGAUCUCCAAUGCCUAGCAcagu
...((((..((((....((((.((.((((((............)))))).)).))))..))))..))))...

Structure

ccg    CU    CAUA    U  C      guauu 
   gugc  GGCA    GGAG UU AUAAau     u
   ||||  ||||    |||| || ||||||      
   cACG  CCGU    CCUC AG UAUuua     u
uga    AU    --AA    U  U      auuac 

Annotation confidence High

Comments

This sequence is referred to by the unofficial identifier Mdo-172a in [1].

Genome context

ref|NC_077234.2|: 95799664-95799735 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1542-1

Mature mdo-miR-1542-1-5p

• Accession: MIMAT0026766
• Description: Monodelphis domestica mdo-miR-1542-1-5p mature miRNA
• Sequence: 8 - CUGGCACAUAGGAGUUUCAUAA - 29
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-1542-3p

• Accession: MIMAT0006141
• Description: Monodelphis domestica mdo-miR-1542-3p mature miRNA
• Sequence: 47 - UAUUGAUCUCCAAUGCCUAGCA - 68
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45