Stem-loop mdo-mir-1549

Accession

MI0007274

Description

Monodelphis domestica mdo-mir-1549 precursor miRNA

Sequence

31917 reads, 548 reads per million, 5 experiments

cUCGCCGGGCUCGUAGGUAGAAGCugaguuuuguuuugcUUCCGCCCUGCAAGCCCGGUAgcu
...((((((((.((((((.(((((.............))))).).))))).))))))))....

Structure

-cUC        C     - A     ugagu 
    GCCGGGCU GUAGG U GAAGC     u
    |||||||| ||||| | |||||     u
    UGGCCCGA CGUCC G CUUcg     u
ucgA        A     C C     uuuug 

Annotation confidence Medium

Comments

This sequence is referred to by the unofficial identifier Mdo-315 in [1].

Genome context

NW_001586660.1: 16844-16906 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-1549

Mature mdo-miR-1549-3p

• Accession: MIMAT0006149
• Description: Monodelphis domestica mdo-miR-1549-3p mature miRNA
• Sequence: 40 - UUCCGCCCUGCAAGCCCGGUA - 60
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mdo-miR-1549-5p

• Accession: MIMAT0026773
• Description: Monodelphis domestica mdo-miR-1549-5p mature miRNA
• Sequence: 2 - UCGCCGGGCUCGUAGGUAGAAGC - 24
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45