Stem-loop gga-mir-1555

Accession

MI0007280

Description

Gallus gallus gga-mir-1555 precursor miRNA

Literature search

1 open access papers mention gga-mir-1555
(2 sentences)

Sequence

156 reads, 2 reads per million, 5 experiments

gaaggugugaagucAGCAAACCCUUCACCCUGCCguguucccuucaugccaggCAGGGUUAUUGGUUUUGUGUGAcaucgcaucuc
..((((((((.(((((((((.((...((((((((..((.........))..))))))))....)).))))).)))).)))))))).

Structure

ga        a    -     C  -UUC        gu  ucc 
  agguguga gucA GCAAA CC    ACCCUGCC  gu   c
  |||||||| |||| ||||| ||    ||||||||  ||   u
  ucuacgcu cAGU UGUUU GG    UGGGACgg  cg   u
-c        a    G     U  UUAU        ac  uac 

Annotation confidence Not enough data

Genome context

chr1: 144936070-144936155 [-]

Mature gga-miR-1555-3p

• Accession: MIMAT0007412
• Description: Gallus gallus gga-miR-1555-3p mature miRNA
• Sequence: 54 - CAGGGUUAUUGGUUUUGUGUGA - 75
• Evidence: experimental ; Illumina [1-2]

Mature gga-miR-1555-5p

• Accession: MIMAT0026774
• Description: Gallus gallus gga-miR-1555-5p mature miRNA
• Sequence: 15 - AGCAAACCCUUCACCCUGCC - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45