miRBase entry: gga-mir-1564

Stem-loop gga-mir-1564


Accession
MI0007289
Description
Gallus gallus gga-mir-1564 precursor miRNA


Sequence

1 reads, 0 reads per million, 1 experiments
gugcuGCAAUGAACACGGCAGUAGAGGUagcgcugugguuggaagcCUCCUCUGCCGUGCUGGUUGUGaac
.....(((((.(.((((((((..((((((((......)))....)))))..)))))))).).)))))....

Structure
gugcu     G A        UA     ----   gc 
     GCAAU A CACGGCAG  GAGGU    agc  u
     ||||| | ||||||||  |||||    |||   
     UGUUG U GUGCCGUC  CUCcg    uug  g
-caaG     G C        UC     aagg   gu 


Annotation confidence Not enough data
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Genome context
chr14: 12315005-12315075 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1564
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1564-5p

Accession MIMAT0007423
Description Gallus gallus gga-miR-1564-5p mature miRNA
Sequence 6 - GCAAUGAACACGGCAGUAGAGGU - 28
Evidence experimental
Illumina [1]

Mature gga-miR-1564-3p

Accession MIMAT0007424
Description Gallus gallus gga-miR-1564-3p mature miRNA
Sequence 47 - CUCCUCUGCCGUGCUGGUUGUG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964