Stem-loop gga-mir-1587

Accession

MI0007314

Description

Gallus gallus gga-mir-1587 precursor miRNA

Literature search

2 open access papers mention gga-mir-1587
(2 sentences)

Sequence

22 reads, 2 reads per million, 4 experiments

ggcgccgccggggcacGGGCUGGGCUGGGCUGGGCAgcggagcgcggcaucgcggcugcucccguccuuuucuucuuccugcccuucguaaccgcu
((((..((.((((((.(((..(((..((((.(((.(((((..((((....)))).))))))))))))..)))....)))))))))..))...))))

Structure

    -cc  -c      c   --CU   CU    U   C     ag    g 
ggcg   gc  ggggca GGG    GGG  GGGC GGG Agcgg  cgcg c
||||   ||  |||||| |||    |||  |||| ||| |||||  ||||  
ucgc   ug  ucccgu ccu    cuu  ccug ccc ucguc  gcgc a
    caa  cu      -   ucuu   uu    -   -     -g    u 

Annotation confidence Not enough data

Genome context

chr19: 1798669-1798764 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-1587

Mature gga-miR-1587

• Accession: MIMAT0007449
• Description: Gallus gallus gga-miR-1587 mature miRNA
• Sequence: 17 - GGGCUGGGCUGGGCUGGGCA - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964