Stem-loop gga-mir-1618

Accession

MI0007347

Description

Gallus gallus gga-mir-1618 precursor miRNA

Literature search

2 open access papers mention gga-mir-1618
(3 sentences)

Sequence

1872 reads, 2.0 reads per million, 145 experiments

cugcgugcUGCAUCCUGGCUCCUGGCGUCCUGcacgugcuauuggAGAGCCCGGAGCCAGGCUGCUGUUcuccaggcag
((((.(((.(((.(((((((((.(((.(((.((....))....)))..))).))))))))).))).).....)).))))

Structure

    g  ----- U   U         U   -G   ---U  a 
cugc ug     c GCA CCUGGCUCC GGC  UCC    Gc c
|||| ||     | ||| ||||||||| |||  |||    ||  
gacg ac     G CGU GGACCGAGG CCG  Agg    cg g
    g  cucUU U   C         C   AG   uuau  u 

Annotation confidence High

Genome context

8: 7442874-7442952 [+]

Mature gga-miR-1618-5p

• Accession: MIMAT0026776
• Description: Gallus gallus gga-miR-1618-5p mature miRNA
• Sequence: 9 - UGCAUCCUGGCUCCUGGCGUCCUG - 32
• Evidence: experimental ; Illumina [2]

Mature gga-miR-1618-3p

• Accession: MIMAT0007485
• Description: Gallus gallus gga-miR-1618-3p mature miRNA
• Sequence: 46 - AGAGCCCGGAGCCAGGCUGCUGUU - 69
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45