Stem-loop gga-mir-1623

Accession

MI0007352

Description

Gallus gallus gga-mir-1623 precursor miRNA

Literature search

3 open access papers mention gga-mir-1623
(4 sentences)

Sequence

5 reads, 1 reads per million, 3 experiments

gagcaugaaggcauagcacggauGCAGGCACAGACAGGCAGUAcugcagagaugcaaccucugccuacuaaccucaagugaaaguaccuccugcuc
(((((.((.((.....(((...((.(((...((..((((((...((((....))))....)))))).))..))))).)))......)))).)))))

Structure

     u  a  -cauag   gga  C   CAC  AC      -UAc    g 
gagca ga gg      cac   uG AGG   AG  AGGCAG    ugca a
||||| || ||      |||   || |||   ||  ||||||    ||||  
cucgu cu cc      gug   ac ucc   uc  uccguc    acgu g
     c  -  augaaa   --a  -   -aa  -a      ucca    a 

Annotation confidence Not enough data

Genome context

chr10: 1942149-1942244 [+]

Mature gga-miR-1623

• Accession: MIMAT0007491
• Description: Gallus gallus gga-miR-1623 mature miRNA
• Sequence: 24 - GCAGGCACAGACAGGCAGUA - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964