miRBase entry: gga-mir-1647

Stem-loop gga-mir-1647


Accession
MI0007379
Description
Gallus gallus gga-mir-1647 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
ccacauaguggcucucggacccucuuuUCUCUGCCUGAGGGGUACUCUgagguacaagaguugccccguaggcauggcaaggugguucugagcagcacagcuagagg
((...((((((((((((((.((.((((.((.((((((.((((((((((........)))).)))))).)))))).)).)))).)).)))))).))).)).)))..))

Structure
  aca   -  -   -      c  u    U  C      A      -    gag 
cc   uag ug gcu cucgga cc cuuu CU UGCCUG GGGGUA CUCU   g
||   ||| || ||| |||||| || |||| || |||||| |||||| ||||    
gg   auc ac cga gagucu gg ggaa gg acggau ccccgu gaga   u
  -ag   g  a   c      u  u    c  u      g      u    aca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr28: 2280564-2280670 [+]

Database links

Mature gga-miR-1647

Accession MIMAT0007523
Description Gallus gallus gga-miR-1647 mature miRNA
Sequence 28 - UCUCUGCCUGAGGGGUACUCU - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964