Stem-loop gga-mir-1649

Accession

MI0007381

Description

Gallus gallus gga-mir-1649 precursor miRNA

Literature search

1 open access papers mention gga-mir-1649
(1 sentences)

Sequence

9 reads, 1 reads per million, 5 experiments

gugcuguuggcucuccuccuccUCCUGCAGAAGGUGCGGCUGugcgcuccccaacggCUCCGUGCACUCUGCAGGCAcaggagugagcccugacccac
(((..((((((((..(((((...((((((((..((((((((((..........)))))..)))))..))))))))...))))).)))))..))).)))

Structure

   cu   --     uc     ccU        AG     --     gcgc 
gug  guu  ggcuc  cuccu   CCUGCAGA  GUGCG  GCUGu    u
|||  |||  |||||  |||||   ||||||||  |||||  |||||     
cac  cag  ccgag  gagga   GGACGUCU  CGUGC  Cggca    c
   -c   uc     -u     cAC        CA     CU     accc 

Annotation confidence Not enough data

Genome context

chr3: 21881902-21881999 [+]

Mature gga-miR-1649-5p

• Accession: MIMAT0007526
• Description: Gallus gallus gga-miR-1649-5p mature miRNA
• Sequence: 23 - UCCUGCAGAAGGUGCGGCUG - 42
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1649-3p

• Accession: MIMAT0007527
• Description: Gallus gallus gga-miR-1649-3p mature miRNA
• Sequence: 58 - CUCCGUGCACUCUGCAGGCA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964