Stem-loop gga-mir-1650

Accession

MI0007382

Description

Gallus gallus gga-mir-1650 precursor miRNA

Literature search

3 open access papers mention gga-mir-1650
(5 sentences)

Sequence

389 reads, 1.0 reads per million, 88 experiments

ggaagcucugccAGUGGCAAGCUGAAGGCCagggagcagccacagcagcuaacUCCUCUGAGCUCAGCUUCGCCUCUgccagucucucugucc
(((((..(((.(((.((((((((((..(((((((((.(((.......)))..)))).))).))))))))).))).))).))).)).)))....

Structure

----   -  cu   c   U   -       AG  -   -    -c   ca 
    gga ag  cug cAG GGC AAGCUGA  GC Cag ggag  agc  c
    ||| ||  ||| ||| ||| |||||||  || ||| ||||  |||  a
    ucu uc  gac gUC CCG UUCGACU  CG GUC CCUc  ucg  g
ccug   c  -u   c   U   C       --  A   U    aa   ac 

Annotation confidence High

Genome context

2: 22618061-22618153 [-]

Mature gga-miR-1650-5p

• Accession: MIMAT0051242
• Description: Gallus gallus gga-miR-1650-5p mature miRNA
• Sequence: 13 - AGUGGCAAGCUGAAGGCC - 30
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1650-3p

• Accession: MIMAT0007528
• Description: Gallus gallus gga-miR-1650-3p mature miRNA
• Sequence: 54 - UCCUCUGAGCUCAGCUUCGCCUCU - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964