Stem-loop gga-mir-1668

Accession

MI0007402

Description

Gallus gallus gga-mir-1668 precursor miRNA

Literature search

3 open access papers mention gga-mir-1668
(10 sentences)

Sequence

2 reads, 0 reads per million, 2 experiments

gagggcugcccugcagGUGGGCUGGGAGCACAGGCACUgugggcuucguguggUGCUGUGUCCUCACUCACCUUcauggcuugcagaauc
....((.(((.((.(((((((.((((.((((((.((((....((.....)))))))))))).))))))))))).)).)))..))......

Structure

--gagg  -u   c  c       C    A      G    gugg  u 
      gc  gcc ug agGUGGG UGGG GCACAG CACU    gc u
      ||  ||| || ||||||| |||| |||||| ||||    || c
      cg  cgg ac UCCACUC ACUC UGUGUC GUgg    ug g
cuaaga  uu   u  U       -    C      -    ----  u 

Annotation confidence Not enough data

Comments

This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (rul06e06.b1).

Genome context

chr33: 217270-217359 [-]

Mature gga-miR-1668-5p

• Accession: MIMAT0007551
• Description: Gallus gallus gga-miR-1668-5p mature miRNA
• Sequence: 17 - GUGGGCUGGGAGCACAGGCACU - 38
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1668-3p

• Accession: MIMAT0007552
• Description: Gallus gallus gga-miR-1668-3p mature miRNA
• Sequence: 54 - UGCUGUGUCCUCACUCACCUU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964