Stem-loop gga-mir-1699

Accession

MI0007434

Description

Gallus gallus gga-mir-1699 precursor miRNA

Literature search

1 open access papers mention gga-mir-1699
(9 sentences)

Sequence

7491 reads, 10.0 reads per million, 117 experiments

gccuggaagcccugcgcacccgCCCUUGGCAUGCUCCUCUCGGCcucuggaaacauccCCAGAGGGACAUGGCAGGGCAAggugcucaaggcauagc
........(((.((.(((((.(((((.(.((((.((((((.((.....(((....))))))))))).)))).))))))..))))).)).))).....

Structure

gccuggaa   c  c     -c     U G    C      C  Ccucu   a 
        gcc ug gcacc  gCCCU G CAUG UCCUCU GG     gga a
        ||| || |||||  ||||| | |||| |||||| ||     |||  
        cgg ac cgugg  CGGGA C GUAC GGGAGA CC     ccu c
---cgaua   a  u     AA     - G    A      -  -----   a 

Annotation confidence High

Genome context

11: 19136466-19136562 [-]

Mature gga-miR-1699-5p

• Accession: MIMAT0051249
• Description: Gallus gallus gga-miR-1699-5p mature miRNA
• Sequence: 23 - CCCUUGGCAUGCUCCUCUCGGC - 44
• Evidence: experimental ; Illumina [1]

Mature gga-miR-1699-3p

• Accession: MIMAT0007591
• Description: Gallus gallus gga-miR-1699-3p mature miRNA
• Sequence: 59 - CCAGAGGGACAUGGCAGGGCAA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964