miRBase entry: gga-mir-1797

Stem-loop gga-mir-1797


Accession
MI0007540
Description
Gallus gallus gga-mir-1797 precursor miRNA


Sequence

9 reads, 0 reads per million, 4 experiments
gggcugaggcucgcaguccaagucucugcccaggaccaacugcugcagccacaacaGCUUGGAACUGAGCAGGAACUGcacagcugugguuuccauggccu
((((((((((.((((((...(((.(((((.(((..(((((((.((......)).))).))))..))).))))).))).....)))))))))))...)))))

Structure
     ---     u      --cca   c     c   ga    -   c  ca 
gggcu   gaggc cgcagu     agu ucugc cag  ccaa cug ug  g
|||||   ||||| ||||||     ||| ||||| |||  |||| ||| ||   
uccgg   cuuug gugucg     UCA GGACG GUC  GGUU Gac ac  c
     uac     -      acacG   A     A   AA    C   a  ac 


Annotation confidence Not enough data
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Genome context
chr26: 2279191-2279291 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-1797
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-1797

Accession MIMAT0007711
Description Gallus gallus gga-miR-1797 mature miRNA
Sequence 57 - GCUUGGAACUGAGCAGGAACUG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964