miRBase entry: gga-mir-1800

Stem-loop gga-mir-1800


Accession
MI0007544
Description
Gallus gallus gga-mir-1800 precursor miRNA


Sequence

128 reads, 4.0 reads per million, 39 experiments
ccugccgugACUACGUGAUGCGAUCUGAUGgcucagaggcugauugcuguccucugcauccugcuggcugcucagg
((((..(((.(((((.((((((....((((((((((...))))..))))))...)))))).)).))).))).))))

Structure
    cc   A   -  U      AUCU      --    a 
ccug  gug CUA CG GAUGCG    GAUGgc  ucag  
||||  ||| ||| || ||||||    ||||||  |||| g
ggac  cgu ggu gu cuacgu    cugucg  aguc  
    -u   c   c  c      -cuc      uu    g 


Annotation confidence Not enough data
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Genome context
5: 44661432-44661507 [+]

Database links

Mature gga-miR-1800-5p

Accession MIMAT0007716
Description Gallus gallus gga-miR-1800-5p mature miRNA
Sequence 10 - ACUACGUGAUGCGAUCUGAUG - 30
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964