Stem-loop mml-mir-30c-1

Accession

MI0007599

Description

Macaca mulatta mml-mir-30c-1 precursor miRNA

Literature search

2 open access papers mention mml-mir-30c-1
(7 sentences)

Sequence

185627 reads, 1351 reads per million, 8 experiments

accaugcuguagugugUGUAAACAUCCUACACUCUCAGCugugagcucaagguggcUGGGAGAGGGUUGUUUACUCCuucugccaugga
.(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...))))))))).

Structure

a     cu    ugu U       U   ACA         guga   c 
 ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
 |||||  ||||   | ||||||| |||   |||||||||    ||| a
 gguac  cguc   C CAUUUGU GGG   GAGGGUcgg    ugg  
a     --    uuC U       U   --A         ----   a 

Annotation confidence Medium

Genome context

chr1: 40062235-40062323 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-30c-1

Mature mml-miR-30c-5p

• Accession: MIMAT0006170
• Description: Macaca mulatta mml-miR-30c-5p mature miRNA
• Sequence: 17 - UGUAAACAUCCUACACUCUCAGC - 39
• Evidence: experimental ; Illumina [2]

Mature mml-miR-30c-1-3p

• Accession: MIMAT0026805
• Description: Macaca mulatta mml-miR-30c-1-3p mature miRNA
• Sequence: 57 - UGGGAGAGGGUUGUUUACUCC - 77
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18186931
   Identification of novel homologous microRNA genes in the rhesus macaque genome
   Yue J, Sheng Y, Orwig KE
   BMC Genomics (2008) 9:8


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45