Stem-loop mml-mir-143

Accession

MI0007632

Description

Macaca mulatta mml-mir-143 precursor miRNA mir-143

Gene
family

RF00683; mir-143

Literature search

3 open access papers mention mml-mir-143
(4 sentences)

Sequence

11101920 reads, 115525 reads per million, 9 experiments

gcgcagcgccgugucucccagccugagGUGCAGUGCUGCAUCUCUGGucaguugggagucUGAGAUGAAGCACUGUAGCUCaggaagagagaaguuguucugcagc
((((((.((....((((.(..((((((.(((((((((.((((((.((((......)).)).)))))).))))))))).))))))..).))))....)).)))).))

Structure

  -    c  cgug    c ag      G         G      U  -  ag 
gc gcag gc    ucuc c  ccugag UGCAGUGCU CAUCUC GG uc  u
|| |||| ||    |||| |  |||||| ||||||||| |||||| || ||   
cg cguc ug    agag g  ggaCUC AUGUCACGA GUAGAG cu ag  u
  a    u  uuga    a aa      G         A      U  g  gg 

Annotation confidence High

Genome context

chr6: 147550465-147550570 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-143

Mature mml-miR-143-3p

• Accession: MIMAT0006201
• Description: Macaca mulatta mml-miR-143-3p mature miRNA
• Sequence: 61 - UGAGAUGAAGCACUGUAGCUC - 81
• Evidence: experimental ; Illumina [2]

Mature mml-miR-143-5p

• Accession: MIMAT0026823
• Description: Macaca mulatta mml-miR-143-5p mature miRNA
• Sequence: 28 - GUGCAGUGCUGCAUCUCUGG - 47
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18186931
   Identification of novel homologous microRNA genes in the rhesus macaque genome
   Yue J, Sheng Y, Orwig KE
   BMC Genomics (2008) 9:8


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45