Stem-loop mml-mir-889

Accession

MI0007923

Description

Macaca mulatta mml-mir-889 precursor miRNA mir-889

Gene
family

RF04293; mir-889

Literature search

1 open access papers mention mml-mir-889
(2 sentences)

Sequence

33409 reads, 232 reads per million, 9 experiments

gugcuuaaagAAUGGCUGUCCGUAGUAUGGUCucuauauuuaugaugaUUAAUAUCGGACAACCAUUGUuuuaguaucc
(((((.(((.(((((.((((((..((.(((((((.........)).)))))))..)))))).))))).))).)))))..

Structure

--     u   g     C      UA  A     -  uau 
  gugcu aaa AAUGG UGUCCG  GU UGGUC uc   a
  ||||| ||| ||||| ||||||  || ||||| ||   u
  uauga uuU UUACC ACAGGC  UA AUUag ag   u
cc     u   G     A      UA  -     u  uau 

Annotation confidence High

Genome context

chr7: 163381893-163381971 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from mml-mir-889

Mature mml-miR-889-3p

• Accession: MIMAT0006528
• Description: Macaca mulatta mml-miR-889-3p mature miRNA
• Sequence: 49 - UUAAUAUCGGACAACCAUUGU - 69
• Evidence: experimental ; Illumina [2]

Mature mml-miR-889-5p

• Accession: MIMAT0026912
• Description: Macaca mulatta mml-miR-889-5p mature miRNA
• Sequence: 11 - AAUGGCUGUCCGUAGUAUGGUC - 32
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18186931
   Identification of novel homologous microRNA genes in the rhesus macaque genome
   Yue J, Sheng Y, Orwig KE
   BMC Genomics (2008) 9:8


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45