Stem-loop cel-mir-1823

Accession

MI0007985

Description

Caenorhabditis elegans cel-mir-1823 precursor miRNA

Literature search

1 open access papers mention cel-mir-1823
(1 sentences)

Sequence

3105 reads, 20 reads per million, 12 experiments

cuuugaccugaacgucACCCCUAACCCUAUGCAGUAUUUggagcucauaaaaUACUGGAAGUGUUUAGGAGUAAugcucaguugucagaa
.((((((((((.(((.((.(((((.(((.(.((((((((..........)))))))).))).).))))).)).))).))))..)))))).

Structure

c      --    a   c  C     C -  A G        ggag 
 uuugac  cuga cgu AC CCUAA C CU U CAGUAUUU    c
 ||||||  |||| ||| || ||||| | || | ||||||||     
 agacug  gacu guA UG GGAUU G GA A GUCAUaaa    u
a      uu    c   A  A     U U  - G        auac 

Annotation confidence High

Comments

This sequence was erroneously named mir-808 in [1].

Genome context

chrI: 12608619-12608708 [+]

Mature cel-miR-1823-3p

• Accession: MIMAT0006590
• Description: Caenorhabditis elegans cel-miR-1823-3p mature miRNA
• Sequence: 53 - UACUGGAAGUGUUUAGGAGUAA - 74
• Evidence: experimental ; 454 [1], Illumina [2]

Mature cel-miR-1823-5p

• Accession: MIMAT0032035
• Description: Caenorhabditis elegans cel-miR-1823-5p mature miRNA
• Sequence: 17 - ACCCCUAACCCUAUGCAGUAUUU - 39
• Evidence: not_experimental

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 18042455
   Systematic identification of C. elegans miRISC proteins, miRNAs, and mRNA targets by their interactions with GW182 proteins AIN-1 and AIN-2
   "Zhang L, Ding L, Cheung TH, Dong MQ, Chen J, Sewell AK, Liu X, Yates JR 3rd, Han M"
   "Mol Cell (2007) 28:598-613