Stem-loop cfa-mir-132

Accession

MI0008156

Description

Canis lupus familiaris cfa-mir-132 precursor miRNA

Literature search

16 open access papers mention cfa-mir-132
(65 sentences)

Sequence

360520 reads, 863.0 reads per million, 82 experiments

aACCGUGGCUUUCGAUUGUUACUgugggaaccggaggUAACAGUCUACAGCCAUGGUCGc
.(((((((((...((((((((((.(((...)))..))))))))))...)))))))))...

Structure

--a         UUC          -g   g 
   ACCGUGGCU   GAUUGUUACU  ugg  
   |||||||||   ||||||||||  ||| a
   UGGUACCGA   CUGACAAUgg  gcc  
cGC         CAU          ag   a 

Annotation confidence High

Genome context

9: 46984381-46984440 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-132

Mature cfa-miR-132-5p

• Accession: MIMAT0051852
• Description: Canis lupus familiaris cfa-miR-132-5p mature miRNA
• Sequence: 2 - ACCGUGGCUUUCGAUUGUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-132-3p

• Accession: MIMAT0006732
• Description: Canis lupus familiaris cfa-miR-132-3p mature miRNA
• Sequence: 38 - UAACAGUCUACAGCCAUGGUCG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415