Stem-loop cel-mir-1829a

Accession

MI0008197

Description

Caenorhabditis elegans cel-mir-1829a precursor miRNA mir-1829

Gene
family

RF00955; mir-1829

Sequence

1580 reads, 36 reads per million, 16 experiments

AAGGGGACUUCUAAUUGUUUGUAaaaaaucgaguauuaCAACCAUUGGAAUUUCUCUAUU
.((((((.(((((((.(((.((((...........))))))).))))))).))))))...

Structure

--A      C       U   U    aaaa 
   AGGGGA UUCUAAU GUU GUAa    u
   |||||| ||||||| ||| ||||    c
   UCUCUU AAGGUUA CAA Cauu    g
UUA      U       C   -    auga 

Annotation confidence Not enough data

Genome context

chrX: 15588311-15588370 [-]

Mature cel-miR-1829a-5p

• Accession: MIMAT0015267
• Description: Caenorhabditis elegans cel-miR-1829a-5p mature miRNA
• Sequence: 1 - AAGGGGACUUCUAAUUGUUUGUA - 23
• Evidence: experimental ; CLIPseq [3]

Mature cel-miR-1829a-3p

• Accession: MIMAT0006769
• Description: Caenorhabditis elegans cel-miR-1829a-3p mature miRNA
• Sequence: 39 - CAACCAUUGGAAUUUCUCUAUU - 60
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


3. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415