Stem-loop cel-mir-1829c

Accession

MI0008199

Description

Caenorhabditis elegans cel-mir-1829c precursor miRNA mir-1829

Gene
family

RF00955; mir-1829

Literature search

2 open access papers mention cel-mir-1829c
(2 sentences)

Sequence

13573 reads, 170 reads per million, 16 experiments

AAGCGAAAUUCAAGAUGGUUGUAaaacaucgaguacuaCAACCACUGGAAUUUCUCUAUUgc
.((.(((((((.((.((((((((..((.....))..)))))))))).))))))).)).....

Structure

----A  C       A  A        aa  a 
     AG GAAAUUC AG UGGUUGUA  ac u
     || ||||||| || ||||||||  || c
     UC CUUUAAG UC ACCAACau  ug g
cgUUA  U       G  -        ca  a 

Annotation confidence High

Genome context

chrX: 15236362-15236423 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-1829c

Mature cel-miR-1829c-5p

• Accession: MIMAT0006771
• Description: Caenorhabditis elegans cel-miR-1829c-5p mature miRNA
• Sequence: 1 - AAGCGAAAUUCAAGAUGGUUGUA - 23
• Evidence: experimental ; 454 [1], Illumina [2], CLIPseq [3]

Mature cel-miR-1829c-3p

• Accession: MIMAT0032038
• Description: Caenorhabditis elegans cel-miR-1829c-3p mature miRNA
• Sequence: 39 - CAACCACUGGAAUUUCUCUAUU - 60
• Evidence: not_experimental

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


3. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415