Stem-loop cel-mir-1830

Accession

MI0008200

Description

Caenorhabditis elegans cel-mir-1830 precursor miRNA

Literature search

2 open access papers mention cel-mir-1830
(2 sentences)

Sequence

3807 reads, 38 reads per million, 16 experiments

CGAGGUUUCACGUUUUCUAGGCCacgccgcaaauagccagcuuguggCCUAGGAAAUGAGAAAACUCGGC
((((..(((.(((((((((((((((((.((.....))..))..))))))))))))))).)))..))))..

Structure

--    GU   A               --  -c  a 
  CGAG  UUC CGUUUUCUAGGCCac  gc  gc a
  ||||  ||| |||||||||||||||  ||  || a
  GCUC  AAG GUAAAGGAUCCggug  cg  cg u
CG    AA   A               uu  ac  a 

Annotation confidence High

Genome context

chrII: 4371838-4371907 [-]

Mature cel-miR-1830-5p

• Accession: MIMAT0006772
• Description: Caenorhabditis elegans cel-miR-1830-5p mature miRNA
• Sequence: 1 - CGAGGUUUCACGUUUUCUAGGCC - 23
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-1830-3p

• Accession: MIMAT0020778
• Description: Caenorhabditis elegans cel-miR-1830-3p mature miRNA
• Sequence: 48 - CCUAGGAAAUGAGAAAACUCGGC - 70
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577