Stem-loop cel-mir-58b

Accession

MI0008204

Description

Caenorhabditis elegans cel-mir-58b precursor miRNA

Literature search

19 open access papers mention cel-mir-58b
(216 sentences)

Sequence

238 reads, 4 reads per million, 14 experiments

uGACUCGGUGUGUGAUCUCUUAccguuuuauggauaAGAGAUCAACCAUUGAGAUCCAA
.(((((((((..((((((((((((((...)))).))))))))))..))))))).))...

Structure

--u  -       UG          -    u 
   GA CUCGGUG  UGAUCUCUUA ccgu  
   || |||||||  |||||||||| |||| u
   CU GAGUUAC  ACUAGAGAau ggua  
AAC  A       CA          a    u 

Annotation confidence Low

Genome context

chrIV: 6660461-6660519 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cel-mir-58b

Mature cel-miR-58b-3p

• Accession: MIMAT0006776
• Description: Caenorhabditis elegans cel-miR-58b-3p mature miRNA
• Sequence: 37 - AGAGAUCAACCAUUGAGAUCCAA - 59
• Evidence: experimental ; 454 [1], Illumina [2-3]

Mature cel-miR-58b-5p

• Accession: MIMAT0020361
• Description: Caenorhabditis elegans cel-miR-58b-5p mature miRNA
• Sequence: 2 - GACUCGGUGUGUGAUCUCUUA - 22
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


2. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415


3. PubMed ID: 21307183
   Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer
   "Warf MB, Johnson WE, Bass BL"
   "RNA (2011) 17:563-577