Stem-loop gga-mir-216b

Accession

MI0008205

Description

Gallus gallus gga-mir-216b precursor miRNA

Literature search

3 open access papers mention gga-mir-216b
(5 sentences)

Sequence

12802 reads, 22.0 reads per million, 181 experiments

gagucacagacugggAAAUCUCUGCAGGCAAAUGUGAugucuuuauagcaaucucACAAUUACCUGUAGAGAUUCUAcaaucuggcauc
......((((.((((((.((((((((((.((.(((((((.((....))))...))))).)).)))))))))))))).)).)))).....

Structure

gaguca    c  -    A          C  A     ---  u  u 
      caga ug ggAA UCUCUGCAGG AA UGUGA   ug cu u
      |||| || |||| |||||||||| || |||||   || ||  
      gucu ac UCUU AGAGAUGUCC UU ACAcu   ac ga a
-cuacg    a  A    -          A  A     cua  -  u 

Annotation confidence High

Genome context

3: 411721-411809 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-216b

Mature gga-miR-216b-5p

• Accession: MIMAT0007748
• Description: Gallus gallus gga-miR-216b-5p mature miRNA
• Sequence: 16 - AAAUCUCUGCAGGCAAAUGUGA - 37
• Evidence: experimental ; Northern [1]

Mature gga-miR-216b-3p

• Accession: MIMAT0051271
• Description: Gallus gallus gga-miR-216b-3p mature miRNA
• Sequence: 56 - ACAAUUACCUGUAGAGAUUCUA - 77
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40