Stem-loop gga-mir-214

Accession

MI0008208

Description

Gallus gallus gga-mir-214 precursor miRNA

Literature search

41 open access papers mention gga-mir-214
(117 sentences)

Sequence

554144 reads, 398.0 reads per million, 258 experiments

ggacuggcuggacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccucucaccuguACAGCAGGCACAGACAGGCAGUcacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

ggacu      acgga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     u
----u      -----           U          CAC            cacuc 

Annotation confidence High

Genome context

8: 4645731-4645840 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-214

Mature gga-miR-214-5p

• Accession: MIMAT0061077
• Description: Gallus gallus gga-miR-214-5p mature miRNA
• Sequence: 30 - UGCCUGUCUACACUUGCUGUGC - 51
• Evidence: experimental ; Northern [1]

Mature gga-miR-214-3p

• Accession: MIMAT0007751
• Description: Gallus gallus gga-miR-214-3p mature miRNA
• Sequence: 71 - ACAGCAGGCACAGACAGGCAGU - 92
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40