Stem-loop ssc-mir-34a

Accession

MI0008216

Description

Sus scrofa ssc-mir-34a precursor miRNA

Literature search

15 open access papers mention ssc-mir-34a
(74 sentences)

Sequence

11 reads, 16 reads per million, 5 experiments

uuucuuUGGCAGUGUCUUAGCUGGUUGUugugaguaauagcaaaggaagcaaucagcagcauccugcccuagaaca
.((((..(((((.(.....((((((((((..................)))))))))).....))))))..))))..

Structure

-u    uU     U UCUUA          gugaguaa 
  uucu  GGCAG G     GCUGGUUGUu        u
  ||||  ||||| |     ||||||||||         
  aaga  ccguc c     cgacuaacga        a
ac    uc     - uacga          aggaaacg 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssc-miR-34a

• Accession: MIMAT0007757
• Description: Sus scrofa ssc-miR-34a mature miRNA
• Sequence: 7 - UGGCAGUGUCUUAGCUGGUUGU - 28
• Evidence: experimental ; cloned [1-2], Illumina [3]

References

1. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


2. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100