Stem-loop ssc-mir-210

Accession

MI0008220

Description

Sus scrofa ssc-mir-210 precursor miRNA

Literature search

47 open access papers mention ssc-mir-210
(88 sentences)

Sequence

239960 reads, 186.0 reads per million, 207 experiments

gcgcagggcAGCCACUGCCCACCGCACACUGcgcugcuccggacccaCUGUGCGUGUGACAGCGGCUGAucugucc
..((((..(((((.(((..(((((((((.((.((((...))).).)).)))))).))).))).)))))..))))..

Structure

gc    gg     A   CC   -      C  c -   c 
  gcag  cAGCC CUG  CAC CGCACA UG g cug  
  ||||  ||||| |||  ||| |||||| || | ||| u
  uguc  GUCGG GAC  GUG GCGUGU ac c ggc  
cc    uA     C   -A   U      C  c a   c 

Annotation confidence High

Genome context

chr2: 339074-339149 [+]

Mature ssc-miR-210-5p

• Accession: MIMAT0052595
• Description: Sus scrofa ssc-miR-210-5p mature miRNA
• Sequence: 10 - AGCCACUGCCCACCGCACACUG - 31
• Evidence: experimental ; cloned [1], Illumina [2-4]

Mature ssc-miR-210-3p

• Accession: MIMAT0007761
• Description: Sus scrofa ssc-miR-210-3p mature miRNA
• Sequence: 48 - CUGUGCGUGUGACAGCGGCUGA - 69
• Evidence: experimental ; cloned [1], Illumina [2-4]

References

1. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168


2. PubMed ID: 18548309
   Identification and characterization of new microRNAs from pig
   "Kim J, Cho IS, Hong JS, Choi YK, Kim H, Lee YS"
   "Mamm Genome (2008) 19:570-580


3. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


4. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100