Dead hairpin entry

Stem-loop osa-MIR812f

Accession

MI0008271

Description

Oryza sativa osa-MIR812f precursor miRNA

Comment

The pattern of deep sequencing reads mapping to this locus does not support its annotation as a microRNA.

Literature search

9 open access papers mention osa-MIR812f
(16 sentences)

Sequence

64158 reads, 243.0 reads per million, 142 experiments

caugaguuuuGUGUCUAACUUUGAUCGUCCGUuuuauuuuaaauuuuuuaugauuaauauuuuuauuguuauuagauuauaaaacacaaauaguacuuuaugugugacuuauguucuuuaguuuuuucaaaaaaaauuaaauaaaacgGAUGAUUAAAGUUGGACACGGAAAuucaugg
(((((((((((((((((((((((((((((((((((((((..((((((((.(((.(((((.......)))))..(((.(((((..((((.((((....)))).))))..))))).))).........))).))))))))))))))))))))))))))))))))))))).)))))))))).

Structure

-          -                             ua        a   uuaauauuuuuauuguuauu   u     aa    a    u 
 caugaguuuu GUGUCUAACUUUGAUCGUCCGUuuuauuu  aauuuuuu uga                    aga uauaa  caca auag a
 |||||||||| |||||||||||||||||||||||||||||  |||||||| |||                    ||| |||||  |||| ||||  
 guacuuAAAG CACAGGUUGAAAUUAGUAGgcaaaauaaa  uuaaaaaa acu                    ucu guauu  gugu uauu c
g          G                             --        a   -----------uuuuugauu   u     ca    g    u