Stem-loop osa-MIR812f

Accession

MI0008271

Description

Oryza sativa osa-MIR812f precursor miRNA

Literature search

9 open access papers mention osa-MIR812f
(16 sentences)

Sequence

64158 reads, 243.0 reads per million, 142 experiments

caugaguuuuGUGUCUAACUUUGAUCGUCCGUuuuauuuuaaauuuuuuaugauuaauauuuuuauuguuauuagauuauaaaacacaaauaguacuuuaugugugacuuauguucuuuaguuuuuucaaaaaaaauuaaauaaaacgGAUGAUUAAAGUUGGACACGGAAAuucaugg
(((((((((((((((((((((((((((((((((((((((..((((((((.(((.(((((.......)))))..(((.(((((..((((.((((....)))).))))..))))).))).........))).))))))))))))))))))))))))))))))))))))).)))))))))).

Structure

-          -                             ua        a   uuaauauuuuuauuguuauu   u     aa    a    u 
 caugaguuuu GUGUCUAACUUUGAUCGUCCGUuuuauuu  aauuuuuu uga                    aga uauaa  caca auag a
 |||||||||| |||||||||||||||||||||||||||||  |||||||| |||                    ||| |||||  |||| ||||  
 guacuuAAAG CACAGGUUGAAAUUAGUAGgcaaaauaaa  uuaaaaaa acu                    ucu guauu  gugu uauu c
g          G                             --        a   -----------uuuuugauu   u     ca    g    u 

Annotation confidence Medium

Genome context

4: 13243503-13243681 [+]

Mature osa-miR812f-5p

• Accession: MIMAT0056072
• Description: Oryza sativa osa-miR812f-5p mature miRNA
• Sequence: 11 - GUGUCUAACUUUGAUCGUCCGU - 32
• Evidence: experimental ; unknown

Mature osa-miR812f-3p

• Accession: MIMAT0007821
• Description: Oryza sativa osa-miR812f-3p mature miRNA
• Sequence: 149 - GAUGAUUAAAGUUGGACACGGAAA - 172
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465