Stem-loop osa-MIR812j

Accession

MI0008299

Description

Oryza sativa osa-MIR812j precursor miRNA

Literature search

10 open access papers mention osa-MIR812j
(17 sentences)

Sequence

264271 reads, 1082.0 reads per million, 142 experiments

agagugcauccuuggucuuggauaguacuuccuuugucccaaaauaagcguagccaugaguuuucUUGUCCAACUUUAAUUGUUCGUCUuauuuaauuuuuuuuugaaaaaacuaaaaaacacaagucacgcauaaacuacuauucauguuuuauaaucuaauaacaauaaaaauacuaaucauacaaaaauuucaaauAAGACGGAUGAUUAAAGUUGGACAcggaaacucauggcugcguuuauuuugugacggagagaguacuauuggaaagaucagcuaguuggaaaaugcca
...(.((((((((((((((.((((((((((.(((((((.((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((...(((.................(((.........)))..((((..((((((((......)))).))))..))))....)))...)))))))..)))))))))))))))))))))))))))).)))))))))))))))))))))))))).))))))).))))))))))...))))))))......)))...)))).

Structure

aga u   ---   ------        --g          c       c                          U                            --       uuu   aaaaacuaaaaaacacaagucacgcauaaacuac    ca    -    aa 
   g gca   ucc      uuggucuu   gauaguacuu cuuuguc caaaauaagcguagccaugaguuuuc UGUCCAACUUUAAUUGUUCGUCUuauuu  aauuuuu   uga                                  uauu  uguu uuau  u
   | |||   |||      ||||||||   |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||   |||                                  ||||  |||| ||||   
   c cgu   agg      gacuagaa   uuaucaugag gaggcag guuuuauuugcgucgguacucaaagg ACAGGUUGAAAUUAGUAGGCAGAAuaaa  uuaaaaa   acu                                  auaa  auaa aaua  c
--a -   aaa   uugauc        agg          a       u                          c                            cu       cau   ------------------------------aauc    aa    c    au 

Annotation confidence Medium

Genome context

8: 19806333-19806629 [+]

Mature osa-miR812j-5p

• Accession: MIMAT0056096
• Description: Oryza sativa osa-miR812j-5p mature miRNA
• Sequence: 66 - UUGUCCAACUUUAAUUGUUCGUCU - 89
• Evidence: experimental ; unknown

Mature osa-miR812j-3p

• Accession: MIMAT0007850
• Description: Oryza sativa osa-miR812j-3p mature miRNA
• Sequence: 200 - AAGACGGAUGAUUAAAGUUGGACA - 223
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465