Stem-loop ath-MIR1886

Accession

MI0008303

Description

Arabidopsis thaliana ath-MIR1886 precursor miRNA

Literature search

2 open access papers mention ath-MIR1886
(3 sentences)

Sequence

45494 reads, 231.0 reads per million, 185 experiments

gagugagagaagUGAGAUGAAAUCUUUGAUUGGAAauuucauguagacgaugcuaucaccccauaugaccaaaagaaauucccAAUUAAAGAUUUCAUCUUACUUcccucaug
..(((((.(((((((((((((((((((((((((.((((((.........(((.........)))..........)))))).))))))))))))))))))))))))).))))).

Structure

ga     a                         A      -auguagacg   cua 
  gugag gaagUGAGAUGAAAUCUUUGAUUGG Aauuuc          aug   u
  ||||| ||||||||||||||||||||||||| ||||||          |||   c
  uacuc cUUCAUUCUACUUUAGAAAUUAAcc uuaaag          uac   a
-g     c                         c      aaaaccagua   ccc 

Annotation confidence High

Genome context

chr2: 15611870-15611982 [+]

Mature ath-miR1886-5p

• Accession: MIMAT0012129
• Description: Arabidopsis thaliana ath-miR1886-5p mature miRNA
• Sequence: 13 - UGAGAUGAAAUCUUUGAUUGGAA - 35
• Evidence: experimental ; Illumina [2]

Mature ath-miR1886-3p

• Accession: MIMAT0013773
• Description: Arabidopsis thaliana ath-miR1886-3p mature miRNA
• Sequence: 84 - AAUUAAAGAUUUCAUCUUACUU - 105
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18542052
   Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
   "German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ"
   "Nat Biotechnol (2008) 26:941-946


2. PubMed ID: 19307293
   Computational and analytical framework for small RNA profiling by high-throughput sequencing
   "Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC"
   "RNA (2009) 15:992-1002