Stem-loop ath-MIR1888a

Accession

MI0008305

Description

Arabidopsis thaliana ath-MIR1888a precursor miRNA

Literature search

2 open access papers mention ath-MIR1888a
(2 sentences)

Sequence

17250 reads, 80.0 reads per million, 178 experiments

ccaaauuuuUAAGUUAAGAUUUGUGAAGAAagagcuuuuauauaagaguuuuuaggcuuauauuuaaauuuuuuCUUCAUAAAUCUUAGCUAAGAuuugg
(((((((((..(((((((((((((((((((((((.((..(((((((..(....)..)))))))..)).))))))))))))))))))))))))))))))))

Structure

         UA                       c  uu       ag u 
ccaaauuuu  AGUUAAGAUUUGUGAAGAAagag uu  auauaag  u u
|||||||||  ||||||||||||||||||||||| ||  |||||||  |  
gguuuAGAA  UCGAUUCUAAAUACUUCuuuuuu aa  uauauuc  a u
         --                       a  uu       gg u 

Annotation confidence High

Genome context

chr5: 7168870-7168969 [+]

Mature ath-miR1888a-5p

• Accession: MIMAT0007855
• Description: Arabidopsis thaliana ath-miR1888a-5p mature miRNA
• Sequence: 10 - UAAGUUAAGAUUUGUGAAGAA - 30
• Evidence: experimental ; PARE [1], Illumina [2]

Mature ath-miR1888a-3p

• Accession: MIMAT0053890
• Description: Arabidopsis thaliana ath-miR1888a-3p mature miRNA
• Sequence: 75 - CUUCAUAAAUCUUAGCUAAGA - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


2. PubMed ID: 18542052
   Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends
   "German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ"
   "Nat Biotechnol (2008) 26:941-946