Stem-loop bmo-mir-2a-1

Accession

MI0008338

Description

Bombyx mori bmo-mir-2a-1 precursor miRNA

Literature search

11 open access papers mention bmo-mir-2a-1
(86 sentences)

Sequence

2053 reads, 390 reads per million, 3 experiments

ggcggaauguagucgugGCAUCAAAGUCGGUUUGUCAUAggucauaacguaacUAUCACAGCCAGCUUUGAUGAGCacgacuucaucugu
.(((((.((.(((((((.(((((((((.((((.((.((((............)))).)))))).)))))))))..))))))).)))))))

Structure

g     a  u       -G         C    U  C    gucau 
 gcgga ug agucgug  CAUCAAAGU GGUU GU AUAg     a
 ||||| || |||||||  ||||||||| |||| || ||||      
 ugucu ac ucagcaC  GUAGUUUCG CCGA CA UAUc     a
-     -  u       GA         A    -  C    aaugc 

Annotation confidence High

Genome context

NW_004582015.1: 7692561-7692650 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-2a-1

Mature bmo-miR-2a-1-5p

• Accession: MIMAT0015271
• Description: Bombyx mori bmo-miR-2a-1-5p mature miRNA
• Sequence: 18 - GCAUCAAAGUCGGUUUGUCAUA - 39
• Evidence: experimental ; Illumina [3]

Mature bmo-miR-2a-3p

• Accession: MIMAT0007894
• Description: Bombyx mori bmo-miR-2a-3p mature miRNA
• Sequence: 54 - UAUCACAGCCAGCUUUGAUGAGC - 76
• Evidence: experimental ; Northern [1], RT-PCR [2], Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148