Stem-loop bmo-mir-2a-2

Accession

MI0008339

Description

Bombyx mori bmo-mir-2a-2 precursor miRNA

Literature search

11 open access papers mention bmo-mir-2a-2
(85 sentences)

Sequence

1452 reads, 283 reads per million, 3 experiments

aauguuucgucgCUCACAAAGUGGUUGUCGUAUGcguuuuuacuuuggccaUAUCACAGCCAGCUUUGAUGAGCgaugaa
.....(((((((((((((((((((((((.(((((.(((........)))))))).))))))).))))).)))))))))))

Structure

aaugu           -     -       C     c   uuu 
     uucgucgCUCA CAAAG UGGUUGU GUAUG guu   a
     ||||||||||| ||||| ||||||| ||||| |||    
     aaguagCGAGU GUUUC ACCGACA UAUac cgg   c
-----           A     G       C     -   uuu 

Annotation confidence Medium

Genome context

NW_004582015.1: 7692153-7692232 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-2a-2

Mature bmo-miR-2a-3p

• Accession: MIMAT0007894
• Description: Bombyx mori bmo-miR-2a-3p mature miRNA
• Sequence: 52 - UAUCACAGCCAGCUUUGAUGAGC - 74
• Evidence: experimental ; Northern [1], RT-PCR [2], Illumina [3]

Mature bmo-miR-2a-2-5p

• Accession: MIMAT0015272
• Description: Bombyx mori bmo-miR-2a-2-5p mature miRNA
• Sequence: 13 - CUCACAAAGUGGUUGUCGUAUG - 34
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148