Stem-loop bmo-mir-13a

Accession

MI0008341

Description

Bombyx mori bmo-mir-13a precursor miRNA

Literature search

6 open access papers mention bmo-mir-13a
(23 sentences)

Sequence

110 reads, 23 reads per million, 3 experiments

gauaaucucgauCCUGUCAAAGCGGCGGUGAAAugucuccucccuuucaUAUCACAGCCACUUUGAUGUGgucgguuua
.......((((((.((((((((.(((.((((.(((............))).)))).))).)))))))).))))))....

Structure

gauaauc      C        C   G    A   ucucc 
       ucgauC UGUCAAAG GGC GUGA Aug     u
       |||||| |||||||| ||| |||| |||      
       ggcugG GUAGUUUC CCG CACU Uac     c
---auuu      U        A   A    A   uuucc 

Annotation confidence Not enough data

Genome context

NW_004582015.1: 7692416-7692494 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-13a

Mature bmo-miR-13a-5p

• Accession: MIMAT0007896
• Description: Bombyx mori bmo-miR-13a-5p mature miRNA
• Sequence: 13 - CCUGUCAAAGCGGCGGUGAAA - 33
• Evidence: experimental ; Northern [1]

Mature bmo-miR-13a-3p

• Accession: MIMAT0007897
• Description: Bombyx mori bmo-miR-13a-3p mature miRNA
• Sequence: 50 - UAUCACAGCCACUUUGAUGUG - 70
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148