Stem-loop bmo-mir-13b

Accession

MI0008342

Description

Bombyx mori bmo-mir-13b precursor miRNA

Literature search

5 open access papers mention bmo-mir-13b
(19 sentences)

Sequence

460 reads, 88 reads per million, 3 experiments

guccauggcccacUCGUAAAAAUGGCUGUGUCGUGuagcaacccucaUAUCACAGCCAUUUUUGACGAGUugggcugugu
...(((((((((((((((((((((((((((..(((.((.....)))))..))))))))))))).))))).))))))))).

Structure

guc         -     -             UC   u  c 
   cauggccca cUCGU AAAAAUGGCUGUG  GUG ag a
   ||||||||| ||||| |||||||||||||  ||| || a
   gugucgggu GAGCA UUUUUACCGACAC  Uac uc c
--u         U     G             UA   -  c 

Annotation confidence High

Genome context

NW_004582015.1: 7692288-7692367 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-13b

Mature bmo-miR-13b-5p

• Accession: MIMAT0015274
• Description: Bombyx mori bmo-miR-13b-5p mature miRNA
• Sequence: 14 - UCGUAAAAAUGGCUGUGUCGUG - 35
• Evidence: experimental ; Illumina [3]

Mature bmo-miR-13b-3p

• Accession: MIMAT0007898
• Description: Bombyx mori bmo-miR-13b-3p mature miRNA
• Sequence: 48 - UAUCACAGCCAUUUUUGACGAGU - 70
• Evidence: experimental ; Northern [1], cloned [2], Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


3. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997