Stem-loop bmo-mir-79

Accession

MI0008343

Description

Bombyx mori bmo-mir-79 precursor miRNA

Literature search

7 open access papers mention bmo-mir-79
(11 sentences)

Sequence

4234 reads, 743 reads per million, 3 experiments

cgccgccgggcgcgcugcgacgCUUUGGCGAUUUAGCUCCGUGAcaucauuccgUUCAUAAAGCUAGAUUACCAAAGCAUcgcgucgcgccgucucaacg
........((((((.(((((.(((((((.(((((((((..(((((........).))))..))))))))).))))))).))))).)))))).........

Structure

-cgccgccg      c     c       C         CC    - auc 
         ggcgcg ugcga gCUUUGG GAUUUAGCU  GUGA c   a
         |||||| ||||| ||||||| |||||||||  |||| |    
         ccgcgc gcgcU CGAAACC UUAGAUCGA  UACU g   u
gcaacucug      u     A       A         AA    U ccu 

Annotation confidence Not enough data

Genome context

NW_004581774.1: 31444-31543 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from bmo-mir-79

Mature bmo-miR-79-5p

• Accession: MIMAT0015275
• Description: Bombyx mori bmo-miR-79-5p mature miRNA
• Sequence: 23 - CUUUGGCGAUUUAGCUCCGUGA - 44
• Evidence: experimental ; Illumina [3]

Mature bmo-miR-79-3p

• Accession: MIMAT0007899
• Description: Bombyx mori bmo-miR-79-3p mature miRNA
• Sequence: 55 - UUCAUAAAGCUAGAUUACCAAAGCAU - 80
• Evidence: experimental ; RT-PCR [2], Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148