Stem-loop bmo-mir-87

Accession

MI0008344

Description

Bombyx mori bmo-mir-87 precursor miRNA

Literature search

4 open access papers mention bmo-mir-87
(5 sentences)

Sequence

10909 reads, 152.0 reads per million, 34 experiments

ugaagaaguucgguacacuaauGGGCCUGAAUCGUUGCUCAGACcuguauuuucgaccaggUGAGCAAACUUUCAGGUGUGUuagugccggcuggucuaca
...((((((.(((..((((((((.(((((((...((((((..(((((..........)))))))))))...))))))).))))))))))))))..)))...

Structure

uga   --   u   ua        G       UCG      AG     uauu 
   aga  agu cgg  cacuaauG GCCUGAA   UUGCUC  ACcug    u
   |||  ||| |||  |||||||| |||||||   ||||||  |||||     
   ucu  ucg gcc  gugauUGU UGGACUU   AACGAG  Uggac    u
aca   gg   -   --        G       UCA      --     cagc 

Annotation confidence High

Genome context

dbj|BSVE01000028.1|: 8412542-8412642 [-]

Mature bmo-miR-87-5p

• Accession: MIMAT0053129
• Description: Bombyx mori bmo-miR-87-5p mature miRNA
• Sequence: 23 - GGGCCUGAAUCGUUGCUCAGAC - 44
• Evidence: experimental ; RT-PCR [2], Illumina [3]

Mature bmo-miR-87-3p

• Accession: MIMAT0007900
• Description: Bombyx mori bmo-miR-87-3p mature miRNA
• Sequence: 62 - UGAGCAAACUUUCAGGUGUGU - 82
• Evidence: experimental ; RT-PCR [2], Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148