Stem-loop bmo-mir-210

Accession

MI0008347

Description

Bombyx mori bmo-mir-210 precursor miRNA

Literature search

6 open access papers mention bmo-mir-210
(9 sentences)

Sequence

587 reads, 12.0 reads per million, 26 experiments

aaugaaguccaaagcAGCUGCUGGCCACUGCACAAGAUuagucaaguuuauacucUUGUGCGUGUGACAGCGGCUauugcgggcauuucauu
((((((((((..((.((((((((..((((((((((((.((..........)).))))))))).))).)))))))).))..))))..))))))

Structure

      --    aa  c        GC   -         U  guca 
aaugaa  gucc  ag AGCUGCUG  CAC UGCACAAGA ua    a
||||||  ||||  || ||||||||  ||| ||||||||| ||     
uuacuu  cggg  uu UCGGCGAC  GUG GCGUGUUcu au    g
      ua    cg  a        -A   U         c  auuu 

Annotation confidence High

Genome context

dbj|BSVE01000013.1|: 13376810-13376901 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bmo-mir-210

Mature bmo-miR-210-5p

• Accession: MIMAT0053131
• Description: Bombyx mori bmo-miR-210-5p mature miRNA
• Sequence: 16 - AGCUGCUGGCCACUGCACAAGAU - 38
• Evidence: experimental ; Illumina [2]

Mature bmo-miR-210-3p

• Accession: MIMAT0007903
• Description: Bombyx mori bmo-miR-210-3p mature miRNA
• Sequence: 56 - UUGUGCGUGUGACAGCGGCU - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148