miRBase entry: bmo-mir-317

Stem-loop bmo-mir-317


Accession
MI0008349
Description
Bombyx mori bmo-mir-317 precursor miRNA

Literature search
8 open access papers mention bmo-mir-317
(14 sentences)

Sequence

10926 reads, 1925 reads per million, 3 experiments
gggcuaucgaacgacCGGGUGCCACGCUGUGCUCUCUcgaaaauuauggcggAGUGAACACAGCUGGUGGUAUCucaguuguucccuaguuc
((((((..(((((((.(((((((((((((((.((.(((.............))).)).))))))..)))))))))..)))))))..))))))

Structure
      uc       -C         --      C  U   gaaaa 
gggcua  gaacgac  GGGUGCCAC  GCUGUG UC CUc     u
||||||  |||||||  |||||||||  |||||| || |||     u
cuugau  cuuguug  uCUAUGGUG  CGACAC AG GAg     a
      cc       ac         GU      A  U   gcggu 


Annotation confidence High
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Genome context
NW_004581681.1: 3841495-3841586 [-]

Database links

Mature bmo-miR-317-5p

Accession MIMAT0015277
Description Bombyx mori bmo-miR-317-5p mature miRNA
Sequence 16 - CGGGUGCCACGCUGUGCUCUCU - 37
Evidence experimental
Illumina [3]
Database links

Mature bmo-miR-317-3p

Accession MIMAT0007906
Description Bombyx mori bmo-miR-317-3p mature miRNA
Sequence 53 - AGUGAACACAGCUGGUGGUAUC - 74
Evidence experimental
cloned [2], Illumina [3]
Database links

References

  1. PubMed ID: 18507836
    Identification and characteristics of microRNAs from Bombyx mori
    He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
    BMC Genomics (2008) 9:248

  2. PubMed ID: 20199675
    MicroRNAs of Bombyx mori identified by Solexa sequencing
    Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
    BMC Genomics (2010) 11:148

  3. PubMed ID: 18714353
    The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
    Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
    PLoS One (2008) 3:e2997