Stem-loop bmo-mir-317

Accession

MI0008349

Description

Bombyx mori bmo-mir-317 precursor miRNA

Literature search

8 open access papers mention bmo-mir-317
(14 sentences)

Sequence

10926 reads, 1906 reads per million, 3 experiments

gggcuaucgaacgacCGGGUGCCACGCUGUGCUCUCUcgaaaauuauggcggAGUGAACACAGCUGGUGGUAUCucaguuguucccuaguuc
((((((..(((((((.(((((((((((((((.((.(((.............))).)).))))))..)))))))))..)))))))..))))))

Structure

      uc       -C         --      C  U   gaaaa 
gggcua  gaacgac  GGGUGCCAC  GCUGUG UC CUc     u
||||||  |||||||  |||||||||  |||||| || |||     u
cuugau  cuuguug  uCUAUGGUG  CGACAC AG GAg     a
      cc       ac         GU      A  U   gcggu 

Annotation confidence High

Genome context

NW_004581681.1: 3841495-3841586 [-]

Mature bmo-miR-317-5p

• Accession: MIMAT0015277
• Description: Bombyx mori bmo-miR-317-5p mature miRNA
• Sequence: 16 - CGGGUGCCACGCUGUGCUCUCU - 37
• Evidence: experimental ; Illumina [3]

Mature bmo-miR-317-3p

• Accession: MIMAT0007906
• Description: Bombyx mori bmo-miR-317-3p mature miRNA
• Sequence: 53 - AGUGAACACAGCUGGUGGUAUC - 74
• Evidence: experimental ; cloned [2], Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


3. PubMed ID: 18714353
   The silkworm (Bombyx mori) microRNAs and their expressions in multiple developmental stages
   Yu X, Zhou Q, Li SC, Luo Q, Cai Y, Lin WC, Chen H, Yang Y, Hu S, Yu J
   PLoS One (2008) 3:e2997