Stem-loop bmo-bantam

Accession

MI0008350

Description

Bombyx mori bmo-bantam precursor miRNA

Literature search

12 open access papers mention bmo-bantam
(40 sentences)

Sequence

12945 reads, 2175 reads per million, 3 experiments

uaaaaggaacuacgaaaCUGGUUUUCAUAAUGAUUUGACAgauuguuuuguauucUGAGAUCAUUGUGAAAGCUAAUUuuguuccuggua
....((((((...((((.((((((((((((((((((..((((...........)))))))))))))))))))))).))))))))))....

Structure

uaaa      uac    C                  GA    uugu 
    aggaac   gaaa UGGUUUUCAUAAUGAUUU  CAga    u
    ||||||   |||| ||||||||||||||||||  ||||    u
    uccuug   uuUU AUCGAAAGUGUUACUAGA  GUcu    u
augg      ---    A                  --    uaug 

Annotation confidence Not enough data

Genome context

NW_004582023.1: 2305314-2305403 [+]

Mature bmo-bantam-5p

• Accession: MIMAT0015278
• Description: Bombyx mori bmo-bantam-5p mature miRNA
• Sequence: 18 - CUGGUUUUCAUAAUGAUUUGACA - 40
• Evidence: experimental ; Illumina [3]

Mature bmo-bantam-3p

• Accession: MIMAT0007907
• Description: Bombyx mori bmo-bantam-3p mature miRNA
• Sequence: 56 - UGAGAUCAUUGUGAAAGCUAAUU - 78
• Evidence: experimental ; Northern [1], RT-PCR [2], Illumina [3]

References

1. PubMed ID: 18507836
   Identification and characteristics of microRNAs from Bombyx mori
   He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y
   BMC Genomics (2008) 9:248


2. PubMed ID: 18977439
   Identification of conserved microRNAs in Bombyx mori (silkworm) and regulation of fibroin L chain production by microRNAs in heterologous system
   "Cao J, Tong C, Wu X, Lv J, Yang Z, Jin Y"
   "Insect Biochem Mol Biol (2008) 38:1066-1071


3. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148