Stem-loop xla-mir-142-1

Accession

MI0008377

Description

Xenopus laevis xla-mir-142-1 precursor miRNA

Literature search

4 open access papers mention xla-mir-142-1
(70 sentences)

Sequence

5506 reads, 1905.0 reads per million, 18 experiments

cagugcagccaCCCAUAAAGUAGAAAGCACUACUagacaggacugaacgcUGUAGUGUUUCCUACUUUAUGGAugaguguacuggg
(((((((..((.(((((((((((.(((((((((.((.(.(.......))))))))))))).))))))))))).))..)))))))..

Structure

--       gc  C           A         U  a a ga 
  cagugca  ca CCAUAAAGUAG AAGCACUAC ag c g  c
  |||||||  || ||||||||||| ||||||||| || | |  u
  gucaugu  gu GGUAUUUCAUC UUUGUGAUG Uc g c  g
gg       ga  A           C         -  - - aa 

Annotation confidence Medium

Genome context

Sc000035_chr2L: 283175-283260 [+]

Mature xla-miR-142-5p

• Accession: MIMAT0011139
• Description: Xenopus laevis xla-miR-142-5p mature miRNA
• Sequence: 12 - CCCAUAAAGUAGAAAGCACUACU - 34
• Evidence: not_experimental

Mature xla-miR-142-3p

• Accession: MIMAT0046455
• Description: Xenopus laevis xla-miR-142-3p mature miRNA
• Sequence: 51 - UGUAGUGUUUCCUACUUUAUGGA - 73
• Evidence: experimental ; Illumina [1]

References

1. 
   "Biasci D, Giudetti G, Barsacchi G, Andreazzoli M"
   (2008) None: