Stem-loop ptr-let-7a-1

Accession

MI0008397

Description

Pan troglodytes ptr-let-7a-1 precursor miRNA

Literature search

5 open access papers mention ptr-let-7a-1
(24 sentences)

Sequence

14967187 reads, 137617.0 reads per million, 24 experiments

gggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccaccacugggAGAUAACUAUACAAUCUACUgucuuuccua
((((.(((((((((((((((((((((.....(((...((((....)))).)))))))))))))))))))))))))))).

Structure

-    U                     uuagg   aca    c 
 ggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
 |||| |||||||||||||||||||||     |||   ||||  
 uccu uucugUCAUCUAACAUAUCAA     UAG   gggu a
a    -                     -----   --A    c 

Annotation confidence Medium

Genome context

chr9: 71912745-71912823 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptr-let-7a-1

Mature ptr-let-7a-5p

• Accession: MIMAT0007936
• Description: Pan troglodytes ptr-let-7a-5p mature miRNA
• Sequence: 5 - UGAGGUAGUAGGUUGUAUAGUU - 26
• Evidence: not_experimental

Mature ptr-let-7a-1-3p

• Accession: MIMAT0052261
• Description: Pan troglodytes ptr-let-7a-1-3p mature miRNA
• Sequence: 50 - AGAUAACUAUACAAUCUACU - 69
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70