Stem-loop ptr-let-7a-3

Accession

MI0008399

Description

Pan troglodytes ptr-let-7a-3 precursor miRNA

Literature search

6 open access papers mention ptr-let-7a-3
(25 sentences)

Sequence

13920006 reads, 129395.0 reads per million, 24 experiments

ggUGAGGUAGUAGGUUGUAUAGUUUggggcucugcccugcuaugGGAUAACUAUACAAUCUACUgucuuuccu
((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))).)).

Structure

-  U                     ---------      u 
 gg GAGGUAGUAGGUUGUAUAGUU         Uggggc  
 || |||||||||||||||||||||         |||||| c
 cc uucugUCAUCUAACAUAUCAA         gucccg  
u  u                     UAGGguauc      u 

Annotation confidence Medium

Genome context

chr22: 32894782-32894854 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptr-let-7a-3

Mature ptr-let-7a-5p

• Accession: MIMAT0007936
• Description: Pan troglodytes ptr-let-7a-5p mature miRNA
• Sequence: 3 - UGAGGUAGUAGGUUGUAUAGUUU - 25
• Evidence: not_experimental

Mature ptr-let-7a-3-3p

• Accession: MIMAT0052262
• Description: Pan troglodytes ptr-let-7a-3-3p mature miRNA
• Sequence: 45 - GGAUAACUAUACAAUCUACU - 64
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70